Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs10498531 | chr14:70320156 | C/T | 1.1E-5 | 396 | 15.85 | 17.35 | 2.37 | KM Plot |
| HNSC | rs10502173 | chr11:113203023 | G/T | 1.16E-5 | 412 | 17.37 | 15.03 | 11.93 | KM Plot |
| HNSC | rs1059524 | chr2:132181483 | A/C | 9.61E-6 | 412 | 13.53 | 16.17 | 16.35 | KM Plot |
| HNSC | rs10644382 | chr20:44442298 | C/CTA | 1.77E-7 | 407 | 16.43 | 14.98 | 9.13 | KM Plot |
| HNSC | rs10718969 | chr20:44377077 | AG/A | 3.58E-8 | 410 | 16.35 | 11.92 | 5.63 | KM Plot |
| HNSC | rs10741586 | chr11:12392342 | G/A | 3.85E-6 | 405 | 5.77 | 17.33 | 16.37 | KM Plot |
| HNSC | rs10831803 | chr11:12390473 | T/C | 3.78E-6 | 405 | 5.77 | 17.6 | 16.35 | KM Plot |
| HNSC | rs10928160 | chr2:143729854 | T/A | 5.12E-7 | 401 | 16.17 | 17.22 | 4.63 | KM Plot |
| HNSC | rs10928162 | chr2:143730963 | C/G | 4.85E-7 | 402 | 16.17 | 17.33 | 4.63 | KM Plot |
| HNSC | rs11015603 | chr10:27484837 | A/C | 2.73E-7 | 412 | 16.2 | 17.37 | 3.13 | KM Plot |
| HNSC | rs11022326 | chr11:12391766 | G/C | 3.85E-6 | 405 | 5.77 | 17.33 | 16.37 | KM Plot |
| HNSC | rs11032958 | chr11:34995774 | G/A | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs11032959 | chr11:34995917 | C/G | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs11032961 | chr11:34998493 | A/G | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs11090859 | chr22:46687460 | T/G | 6.08E-5 | 408 | 16.33 | 18.73 | 11.67 | KM Plot |